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    Cell Signaling Technology Inc anti nrf2 e5f1a rabbit mab
    (A) Gene set enrichment analysis (GSEA) plots derived from RNA-Seq analysis of Cas9-expressing HepG2 cells transduced with sgRNA targeting KEAP1 (sg KEAP1 ) versus cells transduced with sgRNA targeting the safe harbour locus AAVS1 (sgAAVS1), n=4. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (B) Representative immunoblot analysis of sgAAVS1 and sg KEAP1 HepG2 cells. (C) GSEA plot derived from RNA-Seq analysis of HepG2 cells harbouring inducible expression of EGFP (Control) versus cells harbouring inducible expression of <t>NRF2</t> T80K (TO:NRF2 T80K ) after 4 days of DOX-treatment, n=3. NRF2 pathway signature corresponds to Gene Set WP_NRF2_PATHWAY. (D) Volcano plot of differentially expressed genes (DEGs) identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. Cholangiocyte markers are highlighted in green. (E) GSEA plots derived from RNA-Seq analysis of Control versus TO:NRF2 T80K HepG2 cells, n=3. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (F) Representative immunoblot analysis of Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment. (G) Representative confocal images of hepatocyte membrane ( lf :CFP-CAAX, cyan), cholangiocytes ( anxa4 :mScarlet3, red), and a 3D-rendered mask of the cholangiocyte network derived from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae treated with DMSO or DOX from 5 to 10 days post-fertilisation (dpf). White scale bars represent 50 µm. (H) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=8. (I) Magnification of liver sections denoted by hashed lines in (G). White arrows indicate cells expressing hepatocyte (cyan) and cholangiocyte (red) markers. Scale bars represent 10 µm.
    Anti Nrf2 E5f1a Rabbit Mab, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 99/100, based on 6738 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/rabbit+anti+mouse+nrf2/beta-Actin+Mouse+mAb/bio_rxiv__64898__2026__02__09__704724-187-20-24
    Average 99 stars, based on 6738 article reviews
    anti nrf2 e5f1a rabbit mab - by Bioz Stars, 2026-10
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    1) Product Images from "NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity"

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    Journal: bioRxiv

    doi: 10.64898/2026.02.09.704724

    (A) Gene set enrichment analysis (GSEA) plots derived from RNA-Seq analysis of Cas9-expressing HepG2 cells transduced with sgRNA targeting KEAP1 (sg KEAP1 ) versus cells transduced with sgRNA targeting the safe harbour locus AAVS1 (sgAAVS1), n=4. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (B) Representative immunoblot analysis of sgAAVS1 and sg KEAP1 HepG2 cells. (C) GSEA plot derived from RNA-Seq analysis of HepG2 cells harbouring inducible expression of EGFP (Control) versus cells harbouring inducible expression of NRF2 T80K (TO:NRF2 T80K ) after 4 days of DOX-treatment, n=3. NRF2 pathway signature corresponds to Gene Set WP_NRF2_PATHWAY. (D) Volcano plot of differentially expressed genes (DEGs) identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. Cholangiocyte markers are highlighted in green. (E) GSEA plots derived from RNA-Seq analysis of Control versus TO:NRF2 T80K HepG2 cells, n=3. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (F) Representative immunoblot analysis of Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment. (G) Representative confocal images of hepatocyte membrane ( lf :CFP-CAAX, cyan), cholangiocytes ( anxa4 :mScarlet3, red), and a 3D-rendered mask of the cholangiocyte network derived from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae treated with DMSO or DOX from 5 to 10 days post-fertilisation (dpf). White scale bars represent 50 µm. (H) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=8. (I) Magnification of liver sections denoted by hashed lines in (G). White arrows indicate cells expressing hepatocyte (cyan) and cholangiocyte (red) markers. Scale bars represent 10 µm.
    Figure Legend Snippet: (A) Gene set enrichment analysis (GSEA) plots derived from RNA-Seq analysis of Cas9-expressing HepG2 cells transduced with sgRNA targeting KEAP1 (sg KEAP1 ) versus cells transduced with sgRNA targeting the safe harbour locus AAVS1 (sgAAVS1), n=4. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (B) Representative immunoblot analysis of sgAAVS1 and sg KEAP1 HepG2 cells. (C) GSEA plot derived from RNA-Seq analysis of HepG2 cells harbouring inducible expression of EGFP (Control) versus cells harbouring inducible expression of NRF2 T80K (TO:NRF2 T80K ) after 4 days of DOX-treatment, n=3. NRF2 pathway signature corresponds to Gene Set WP_NRF2_PATHWAY. (D) Volcano plot of differentially expressed genes (DEGs) identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. Cholangiocyte markers are highlighted in green. (E) GSEA plots derived from RNA-Seq analysis of Control versus TO:NRF2 T80K HepG2 cells, n=3. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (F) Representative immunoblot analysis of Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment. (G) Representative confocal images of hepatocyte membrane ( lf :CFP-CAAX, cyan), cholangiocytes ( anxa4 :mScarlet3, red), and a 3D-rendered mask of the cholangiocyte network derived from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae treated with DMSO or DOX from 5 to 10 days post-fertilisation (dpf). White scale bars represent 50 µm. (H) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=8. (I) Magnification of liver sections denoted by hashed lines in (G). White arrows indicate cells expressing hepatocyte (cyan) and cholangiocyte (red) markers. Scale bars represent 10 µm.

    Techniques Used: Derivative Assay, RNA Sequencing, Expressing, Transduction, Western Blot, Control, Membrane

    (A) Quantitative PCR (qPCR) analysis of GCLM expression in Control and TO:NRF2 T80K HepG2 cells treated with DOX for 4 days, and sgAAVS1 and sg KEAP1 HepG2 cells, n=3. (B) Representative immunoblot analysis of nuclear fractions from Control and TO:NRF2 T80K HepG2 cells treated with 200 ng/mL DOX for 4 days and sgAAVS1 and sg KEAP1 HepG2 cells. (C) Representative confocal images of CFP (hepatocyte, cyan) and EGFP (NRF2 target gene expression, green) from TO:NRF2 T80K ; gstp1: EGFP zebrafish larvae treated with DMSO or DOX from 5 to 6 dpf. Scale bars represent 50 µm. (D) Schematic of the approach employed to generate the TgKI(mScarlet3-P2A-anxa4) transgenic zebrafish line. (E) Representative confocal images of mScarlet3 (cholangiocyte) from anxa4 :mScarlet3 zebrafish larvae at treated with DMSO or DOX from 5 to 10 dpf. Scale bars represent 50 µm. (F) Immunofluorescent staining of Anxa4 (cholangiocyte) in liver sections from WT and keap1a/b crispants at 14 dpf. Scale bars represent 25 µm.
    Figure Legend Snippet: (A) Quantitative PCR (qPCR) analysis of GCLM expression in Control and TO:NRF2 T80K HepG2 cells treated with DOX for 4 days, and sgAAVS1 and sg KEAP1 HepG2 cells, n=3. (B) Representative immunoblot analysis of nuclear fractions from Control and TO:NRF2 T80K HepG2 cells treated with 200 ng/mL DOX for 4 days and sgAAVS1 and sg KEAP1 HepG2 cells. (C) Representative confocal images of CFP (hepatocyte, cyan) and EGFP (NRF2 target gene expression, green) from TO:NRF2 T80K ; gstp1: EGFP zebrafish larvae treated with DMSO or DOX from 5 to 6 dpf. Scale bars represent 50 µm. (D) Schematic of the approach employed to generate the TgKI(mScarlet3-P2A-anxa4) transgenic zebrafish line. (E) Representative confocal images of mScarlet3 (cholangiocyte) from anxa4 :mScarlet3 zebrafish larvae at treated with DMSO or DOX from 5 to 10 dpf. Scale bars represent 50 µm. (F) Immunofluorescent staining of Anxa4 (cholangiocyte) in liver sections from WT and keap1a/b crispants at 14 dpf. Scale bars represent 25 µm.

    Techniques Used: Real-time Polymerase Chain Reaction, Expressing, Control, Western Blot, Targeted Gene Expression, Transgenic Assay, Staining

    (A) Representative H&E and immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. Scale bars represent 50 µm. (B) Magnification of liver sections denoted by hashed lines in (A). White arrows indicate cells that express CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) markers. Scale bars represent 10 µm. (C) Heatmap of hepatocyte and cholangiocyte gene expression in livers from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX as determined by bulk RNA-Seq analysis, n=3. (D) Uniform Manifold Approximation and Projection (UMAP) visualization of scRNA-Seq data obtained from livers from adult TO:NRF2 T80K zebrafish after 3 weeks treatment with DMSO or DOX. (E) UMAP visualization from the joint clustering of scRNA-Seq data obtained from livers from adult TO:NRF2 T80K zebrafish after 3 weeks treatment with DMSO or DOX. Chol: cholangiocytes; ECs: Endothelial cells; Ery: Erythrocytes; Hep: Hepatocytes; HS_Cells: Hepatic stellate cells; Lymph: Lymphocytes; Mac: Macrophages; Nrf2_trans: Transdifferentiating cells; GB_Cells: Gall bladder cells. (F) Stacked bar chart showing the relative proportions of the major cell types in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. (G) UMAP visualization of fabp10a (hepatocyte) and anxa4 (cholangiocyte) expression in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. Hashed boxes outline cells expressing both markers.
    Figure Legend Snippet: (A) Representative H&E and immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. Scale bars represent 50 µm. (B) Magnification of liver sections denoted by hashed lines in (A). White arrows indicate cells that express CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) markers. Scale bars represent 10 µm. (C) Heatmap of hepatocyte and cholangiocyte gene expression in livers from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX as determined by bulk RNA-Seq analysis, n=3. (D) Uniform Manifold Approximation and Projection (UMAP) visualization of scRNA-Seq data obtained from livers from adult TO:NRF2 T80K zebrafish after 3 weeks treatment with DMSO or DOX. (E) UMAP visualization from the joint clustering of scRNA-Seq data obtained from livers from adult TO:NRF2 T80K zebrafish after 3 weeks treatment with DMSO or DOX. Chol: cholangiocytes; ECs: Endothelial cells; Ery: Erythrocytes; Hep: Hepatocytes; HS_Cells: Hepatic stellate cells; Lymph: Lymphocytes; Mac: Macrophages; Nrf2_trans: Transdifferentiating cells; GB_Cells: Gall bladder cells. (F) Stacked bar chart showing the relative proportions of the major cell types in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. (G) UMAP visualization of fabp10a (hepatocyte) and anxa4 (cholangiocyte) expression in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. Hashed boxes outline cells expressing both markers.

    Techniques Used: Staining, Gene Expression, RNA Sequencing, Expressing

    (A) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO for 4 weeks, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. (B) UMAP visualization of gstp1 expression in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. (C) Masson’s trichome stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. Scale bars represent 50 µm. (D) TUNEL- and DAPI-stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. DNase I treatment was employed as a positive control. Scale bars represent 50 µm.
    Figure Legend Snippet: (A) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO for 4 weeks, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. (B) UMAP visualization of gstp1 expression in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. (C) Masson’s trichome stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. Scale bars represent 50 µm. (D) TUNEL- and DAPI-stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. DNase I treatment was employed as a positive control. Scale bars represent 50 µm.

    Techniques Used: RNA Sequencing, Expressing, Staining, Isolation, TUNEL Assay, Positive Control

    (A) Schematic of DMSO/DOX pulse-chase experiments in adult TO:NRF2 T80K zebrafish. (B) Representative H&E-staining in liver sections from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (C) Representative immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (D) Multidimensional scaling (MDS) plot of bulk RNA-Seq data obtained from livers isolated from adult TO:NRF2 T80K zebrafish after 14 days treatment with either DMSO or DOX, followed by 28-days withdrawal of DMSO or DOX, n=3. (E) Heatmap of hepatocyte and cholangiocyte gene expression in livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX, as determined by bulk RNA-Seq analysis, n=3. (F) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO for 14 days (left), followed by withdrawal of DOX versus DMSO for 28 days (right), n=3. Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green. (G) Volcano plot of DEGs identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment (left), followed by withdrawal of DOX for 4 days (right). Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green.
    Figure Legend Snippet: (A) Schematic of DMSO/DOX pulse-chase experiments in adult TO:NRF2 T80K zebrafish. (B) Representative H&E-staining in liver sections from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (C) Representative immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (D) Multidimensional scaling (MDS) plot of bulk RNA-Seq data obtained from livers isolated from adult TO:NRF2 T80K zebrafish after 14 days treatment with either DMSO or DOX, followed by 28-days withdrawal of DMSO or DOX, n=3. (E) Heatmap of hepatocyte and cholangiocyte gene expression in livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX, as determined by bulk RNA-Seq analysis, n=3. (F) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO for 14 days (left), followed by withdrawal of DOX versus DMSO for 28 days (right), n=3. Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green. (G) Volcano plot of DEGs identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment (left), followed by withdrawal of DOX for 4 days (right). Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green.

    Techniques Used: Pulse Chase, Staining, RNA Sequencing, Isolation, Gene Expression, Control

    (A) Periodic Acid-Schiff (PAS)-stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (B) Heatmap of NRF2 target gene expression in livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX as determined by bulk RNA-Seq analysis, n=3. (C) MDS Plot of RNA-Seq data from Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment, followed by withdrawal of DOX for 4 days.
    Figure Legend Snippet: (A) Periodic Acid-Schiff (PAS)-stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (B) Heatmap of NRF2 target gene expression in livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX as determined by bulk RNA-Seq analysis, n=3. (C) MDS Plot of RNA-Seq data from Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment, followed by withdrawal of DOX for 4 days.

    Techniques Used: Staining, Isolation, Targeted Gene Expression, RNA Sequencing, Control

    (A) Schematic of the epigenetic-focused small molecule inhibitor screen. (B) Heatmap of NRF2 target gene expression in livers isolated from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX in the absence or presence of 250 nM FHD-286 for 14 days as determined by bulk RNA-Seq analysis, n=3. (C) Volcano plot of DEGs identified by bulk RNA-Seq of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO both in the presence of 250 nM FHD-286 for 14 days as determined by bulk RNA-Seq analysis, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue.
    Figure Legend Snippet: (A) Schematic of the epigenetic-focused small molecule inhibitor screen. (B) Heatmap of NRF2 target gene expression in livers isolated from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX in the absence or presence of 250 nM FHD-286 for 14 days as determined by bulk RNA-Seq analysis, n=3. (C) Volcano plot of DEGs identified by bulk RNA-Seq of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO both in the presence of 250 nM FHD-286 for 14 days as determined by bulk RNA-Seq analysis, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue.

    Techniques Used: Targeted Gene Expression, Isolation, RNA Sequencing

    (A) Quantification of cholangiocyte area (mScarlet3), as a ratio of liver area (CFP) area, from an in vivo chemical suppressor screen using an epigenetic-focused library of small molecule inhibitors. The blue dashed line indicates the mean of the DMSO-treated group, whereas the red dashed line indicates the mean of the DOX-treated group. (B) Representative confocal images of CFP (hepatocyte, cyan), mScarlet3 (cholangiocyte, red), and a 3D-rendered mask of the cholangiocyte network from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae with DMSO or DOX in the absence or presence of 100 nM FHD-286 from 5 to 10 dpf. White scale bars represent 50 µm. (C) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=11. (D) Representative H&E and immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX in the absence or presence of 250 nM FHD-286 for 14 days. (E) Quantification of Anxa4 (cholangiocyte) area normalized to CFP (liver) area, n=6. (F) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX (left) or DMSO (right) in the presence versus absence of 250 nM FHD-286 for 14 days. Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green. (G) Gene essentiality scores for SMARCA4 (left) and SMARCA2 (right) in KEAP1 (WT) and KEAP1 (Mutant) samples from TCGA DEPMAP .
    Figure Legend Snippet: (A) Quantification of cholangiocyte area (mScarlet3), as a ratio of liver area (CFP) area, from an in vivo chemical suppressor screen using an epigenetic-focused library of small molecule inhibitors. The blue dashed line indicates the mean of the DMSO-treated group, whereas the red dashed line indicates the mean of the DOX-treated group. (B) Representative confocal images of CFP (hepatocyte, cyan), mScarlet3 (cholangiocyte, red), and a 3D-rendered mask of the cholangiocyte network from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae with DMSO or DOX in the absence or presence of 100 nM FHD-286 from 5 to 10 dpf. White scale bars represent 50 µm. (C) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=11. (D) Representative H&E and immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX in the absence or presence of 250 nM FHD-286 for 14 days. (E) Quantification of Anxa4 (cholangiocyte) area normalized to CFP (liver) area, n=6. (F) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX (left) or DMSO (right) in the presence versus absence of 250 nM FHD-286 for 14 days. Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green. (G) Gene essentiality scores for SMARCA4 (left) and SMARCA2 (right) in KEAP1 (WT) and KEAP1 (Mutant) samples from TCGA DEPMAP .

    Techniques Used: In Vivo, Staining, RNA Sequencing, Isolation, Mutagenesis

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    Article Snippet: .. Subsequently, the membrane was incubated overnight at 4 °C with primary antibodies, namely rabbit anti-mouse NRF2 (1:2000; CST, 12721, Danvers, MA, USA), heme oxygenase-1 (HO-1) (1:2000; CST, 70081, USA), B-cell lymphoma 2 (Bcl-2) (1:2000; CST, 3498, USA), Bax (1:2000; CST, 2772, USA), VSIG4 (1:2000; Abcam, ab252933, Cambridge, UK), and GAPDH (1:2000; CST, 2118, USA). ..

    Article Title: Itaconate and fumarate derivatives exert a dual inhibitory effect on canonical NLRP3 activation in macrophages and microglia
    Article Snippet: The membranes were blocked in either 5% w/v milk or 2.5% BSA (Sigma, A3608) in PBS, 0.1% Tween 20 (PBST) for 1 h at room temperature. .. The membranes were then washed with PBST and incubated at 4°C overnight with goat anti-mouse IL-1β (250 ng ml −1 ; R&D Systems, AF-401-NA), mouse anti-mouse NLRP3 (1 μg ml −1 ; Adipogen, G-20B-0014-C100), rabbit anti-mouse caspase-1 (1.87 μg ml −1 ; Abcam, ab179515), rabbit anti-mouse gasdermin D (0.6 μg ml −1 ; Abcam, ab209845) or rabbit anti-mouse NRF2 (1.5 μg ml −1 ; CST, 12721) primary antibodies in 0.1% (IL-1β), 1% (NLRP3) or 2.5% (caspase-1, gasdermin D, NRF2) BSA in PBST. .. The membranes were washed and incubated with rabbit anti-goat IgG (500 ng ml −1 , 5% milk in PBST; Dako, P044901-2), rabbit anti-mouse IgG (1.3 μg ml −1 , 5% milk in PBST; Dako, P026002-2) or goat anti-rabbit IgG (250 ng ml −1 , 2.5% BSA in PBST; Dako, (Dako, P044801-2) at room temperature for 1 h. Proteins were then visualised with Amersham ECL Western Blotting Detection Reagent (GE Healthcare, RPN2236) and G:BOX (Syngene) and Genesys software. β-Actin (Sigma, A3854) was used as a loading control.

    Staining:

    Article Title: Zinc-induced protective effect for testicular ischemia-reperfusion injury by promoting antioxidation via microRNA-101-3p/Nrf2 pathway
    Article Snippet: .. For specific staining, we incubated slides with rabbit anti-mouse Nrf2 and NF-κB specific antibody (Cell Signaling Technology, USA) overnight at 4 °C. .. Washing and incubating the slides with a 1:100 dilution horseradish peroxidase (HRP)-conjugated anti-goat secondary antibody (Cell Signaling Technology, USA) for 1 hour the next day.

    Membrane:

    Article Title: VSIG4 Alleviates Intracranial Hemorrhage Injury by Regulating Oxidative Stress and Neuroinflammation in Macrophages via the NRF2/HO-1 Signaling Pathway
    Article Snippet: .. Subsequently, the membrane was incubated overnight at 4 °C with primary antibodies, namely rabbit anti-mouse NRF2 (1:2000; CST, 12721, Danvers, MA, USA), heme oxygenase-1 (HO-1) (1:2000; CST, 70081, USA), B-cell lymphoma 2 (Bcl-2) (1:2000; CST, 3498, USA), Bax (1:2000; CST, 2772, USA), VSIG4 (1:2000; Abcam, ab252933, Cambridge, UK), and GAPDH (1:2000; CST, 2118, USA). ..

    Blocking Assay:

    Article Title: Airborne Exposure of the Cornea to PM 10 Induces Oxidative Stress and Disrupts Nrf2 Mediated Anti-Oxidant Defenses
    Article Snippet: Briefly, samples (75 μg) were run on SDS-PAGE in Tris-glycine-SDS buffer and electro-blotted onto nitrocellulose membranes (BioRad). .. After blocking for 1 h in 5% MTBST (Tris Buffer Saline containing 0.05% Tween 20 (TBST) and 5% nonfat milk), membranes were probed with primary antibodies: rabbit anti-mouse Nrf2 (1:500; Cell Signaling Technology, Danvers, MA, USA) in 2% MTBST overnight at 4 °C. .. After three washes with TBST, membranes were incubated with HRP-conjugated anti-rabbit secondary antibody (1:2000; Cell Signaling Technology) and diluted in 5% MTBST at room temperature for 2 h. Bands were developed with Supersignal West Femto Chemiluminescent Substrate (ThermoFisher Scientific), visualized using an iBrightTM CL1500 Imaging System (ThermoFisher Scientific), and normalized to β-Tubulin (1:1000; Abcam, Waltham, MA, USA) and the intensity was quantified using ImageJ software.

    Saline:

    Article Title: Airborne Exposure of the Cornea to PM 10 Induces Oxidative Stress and Disrupts Nrf2 Mediated Anti-Oxidant Defenses
    Article Snippet: Briefly, samples (75 μg) were run on SDS-PAGE in Tris-glycine-SDS buffer and electro-blotted onto nitrocellulose membranes (BioRad). .. After blocking for 1 h in 5% MTBST (Tris Buffer Saline containing 0.05% Tween 20 (TBST) and 5% nonfat milk), membranes were probed with primary antibodies: rabbit anti-mouse Nrf2 (1:500; Cell Signaling Technology, Danvers, MA, USA) in 2% MTBST overnight at 4 °C. .. After three washes with TBST, membranes were incubated with HRP-conjugated anti-rabbit secondary antibody (1:2000; Cell Signaling Technology) and diluted in 5% MTBST at room temperature for 2 h. Bands were developed with Supersignal West Femto Chemiluminescent Substrate (ThermoFisher Scientific), visualized using an iBrightTM CL1500 Imaging System (ThermoFisher Scientific), and normalized to β-Tubulin (1:1000; Abcam, Waltham, MA, USA) and the intensity was quantified using ImageJ software.



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    Image Search Results


    (A) Gene set enrichment analysis (GSEA) plots derived from RNA-Seq analysis of Cas9-expressing HepG2 cells transduced with sgRNA targeting KEAP1 (sg KEAP1 ) versus cells transduced with sgRNA targeting the safe harbour locus AAVS1 (sgAAVS1), n=4. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (B) Representative immunoblot analysis of sgAAVS1 and sg KEAP1 HepG2 cells. (C) GSEA plot derived from RNA-Seq analysis of HepG2 cells harbouring inducible expression of EGFP (Control) versus cells harbouring inducible expression of NRF2 T80K (TO:NRF2 T80K ) after 4 days of DOX-treatment, n=3. NRF2 pathway signature corresponds to Gene Set WP_NRF2_PATHWAY. (D) Volcano plot of differentially expressed genes (DEGs) identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. Cholangiocyte markers are highlighted in green. (E) GSEA plots derived from RNA-Seq analysis of Control versus TO:NRF2 T80K HepG2 cells, n=3. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (F) Representative immunoblot analysis of Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment. (G) Representative confocal images of hepatocyte membrane ( lf :CFP-CAAX, cyan), cholangiocytes ( anxa4 :mScarlet3, red), and a 3D-rendered mask of the cholangiocyte network derived from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae treated with DMSO or DOX from 5 to 10 days post-fertilisation (dpf). White scale bars represent 50 µm. (H) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=8. (I) Magnification of liver sections denoted by hashed lines in (G). White arrows indicate cells expressing hepatocyte (cyan) and cholangiocyte (red) markers. Scale bars represent 10 µm.

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Gene set enrichment analysis (GSEA) plots derived from RNA-Seq analysis of Cas9-expressing HepG2 cells transduced with sgRNA targeting KEAP1 (sg KEAP1 ) versus cells transduced with sgRNA targeting the safe harbour locus AAVS1 (sgAAVS1), n=4. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (B) Representative immunoblot analysis of sgAAVS1 and sg KEAP1 HepG2 cells. (C) GSEA plot derived from RNA-Seq analysis of HepG2 cells harbouring inducible expression of EGFP (Control) versus cells harbouring inducible expression of NRF2 T80K (TO:NRF2 T80K ) after 4 days of DOX-treatment, n=3. NRF2 pathway signature corresponds to Gene Set WP_NRF2_PATHWAY. (D) Volcano plot of differentially expressed genes (DEGs) identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. Cholangiocyte markers are highlighted in green. (E) GSEA plots derived from RNA-Seq analysis of Control versus TO:NRF2 T80K HepG2 cells, n=3. HNF4A signature, Gene Set SUMI_HNF4A_TARGETS; Cholangiocyte signature, Gene set AIZARANI_LIVER_C39_EPCAM_POS_BILE_DUCT_CELLS_4. (F) Representative immunoblot analysis of Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment. (G) Representative confocal images of hepatocyte membrane ( lf :CFP-CAAX, cyan), cholangiocytes ( anxa4 :mScarlet3, red), and a 3D-rendered mask of the cholangiocyte network derived from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae treated with DMSO or DOX from 5 to 10 days post-fertilisation (dpf). White scale bars represent 50 µm. (H) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=8. (I) Magnification of liver sections denoted by hashed lines in (G). White arrows indicate cells expressing hepatocyte (cyan) and cholangiocyte (red) markers. Scale bars represent 10 µm.

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: Derivative Assay, RNA Sequencing, Expressing, Transduction, Western Blot, Control, Membrane

    (A) Quantitative PCR (qPCR) analysis of GCLM expression in Control and TO:NRF2 T80K HepG2 cells treated with DOX for 4 days, and sgAAVS1 and sg KEAP1 HepG2 cells, n=3. (B) Representative immunoblot analysis of nuclear fractions from Control and TO:NRF2 T80K HepG2 cells treated with 200 ng/mL DOX for 4 days and sgAAVS1 and sg KEAP1 HepG2 cells. (C) Representative confocal images of CFP (hepatocyte, cyan) and EGFP (NRF2 target gene expression, green) from TO:NRF2 T80K ; gstp1: EGFP zebrafish larvae treated with DMSO or DOX from 5 to 6 dpf. Scale bars represent 50 µm. (D) Schematic of the approach employed to generate the TgKI(mScarlet3-P2A-anxa4) transgenic zebrafish line. (E) Representative confocal images of mScarlet3 (cholangiocyte) from anxa4 :mScarlet3 zebrafish larvae at treated with DMSO or DOX from 5 to 10 dpf. Scale bars represent 50 µm. (F) Immunofluorescent staining of Anxa4 (cholangiocyte) in liver sections from WT and keap1a/b crispants at 14 dpf. Scale bars represent 25 µm.

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Quantitative PCR (qPCR) analysis of GCLM expression in Control and TO:NRF2 T80K HepG2 cells treated with DOX for 4 days, and sgAAVS1 and sg KEAP1 HepG2 cells, n=3. (B) Representative immunoblot analysis of nuclear fractions from Control and TO:NRF2 T80K HepG2 cells treated with 200 ng/mL DOX for 4 days and sgAAVS1 and sg KEAP1 HepG2 cells. (C) Representative confocal images of CFP (hepatocyte, cyan) and EGFP (NRF2 target gene expression, green) from TO:NRF2 T80K ; gstp1: EGFP zebrafish larvae treated with DMSO or DOX from 5 to 6 dpf. Scale bars represent 50 µm. (D) Schematic of the approach employed to generate the TgKI(mScarlet3-P2A-anxa4) transgenic zebrafish line. (E) Representative confocal images of mScarlet3 (cholangiocyte) from anxa4 :mScarlet3 zebrafish larvae at treated with DMSO or DOX from 5 to 10 dpf. Scale bars represent 50 µm. (F) Immunofluorescent staining of Anxa4 (cholangiocyte) in liver sections from WT and keap1a/b crispants at 14 dpf. Scale bars represent 25 µm.

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: Real-time Polymerase Chain Reaction, Expressing, Control, Western Blot, Targeted Gene Expression, Transgenic Assay, Staining

    (A) Representative H&E and immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. Scale bars represent 50 µm. (B) Magnification of liver sections denoted by hashed lines in (A). White arrows indicate cells that express CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) markers. Scale bars represent 10 µm. (C) Heatmap of hepatocyte and cholangiocyte gene expression in livers from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX as determined by bulk RNA-Seq analysis, n=3. (D) Uniform Manifold Approximation and Projection (UMAP) visualization of scRNA-Seq data obtained from livers from adult TO:NRF2 T80K zebrafish after 3 weeks treatment with DMSO or DOX. (E) UMAP visualization from the joint clustering of scRNA-Seq data obtained from livers from adult TO:NRF2 T80K zebrafish after 3 weeks treatment with DMSO or DOX. Chol: cholangiocytes; ECs: Endothelial cells; Ery: Erythrocytes; Hep: Hepatocytes; HS_Cells: Hepatic stellate cells; Lymph: Lymphocytes; Mac: Macrophages; Nrf2_trans: Transdifferentiating cells; GB_Cells: Gall bladder cells. (F) Stacked bar chart showing the relative proportions of the major cell types in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. (G) UMAP visualization of fabp10a (hepatocyte) and anxa4 (cholangiocyte) expression in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. Hashed boxes outline cells expressing both markers.

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Representative H&E and immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. Scale bars represent 50 µm. (B) Magnification of liver sections denoted by hashed lines in (A). White arrows indicate cells that express CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) markers. Scale bars represent 10 µm. (C) Heatmap of hepatocyte and cholangiocyte gene expression in livers from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX as determined by bulk RNA-Seq analysis, n=3. (D) Uniform Manifold Approximation and Projection (UMAP) visualization of scRNA-Seq data obtained from livers from adult TO:NRF2 T80K zebrafish after 3 weeks treatment with DMSO or DOX. (E) UMAP visualization from the joint clustering of scRNA-Seq data obtained from livers from adult TO:NRF2 T80K zebrafish after 3 weeks treatment with DMSO or DOX. Chol: cholangiocytes; ECs: Endothelial cells; Ery: Erythrocytes; Hep: Hepatocytes; HS_Cells: Hepatic stellate cells; Lymph: Lymphocytes; Mac: Macrophages; Nrf2_trans: Transdifferentiating cells; GB_Cells: Gall bladder cells. (F) Stacked bar chart showing the relative proportions of the major cell types in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. (G) UMAP visualization of fabp10a (hepatocyte) and anxa4 (cholangiocyte) expression in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. Hashed boxes outline cells expressing both markers.

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: Staining, Gene Expression, RNA Sequencing, Expressing

    (A) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO for 4 weeks, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. (B) UMAP visualization of gstp1 expression in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. (C) Masson’s trichome stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. Scale bars represent 50 µm. (D) TUNEL- and DAPI-stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. DNase I treatment was employed as a positive control. Scale bars represent 50 µm.

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO for 4 weeks, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue. (B) UMAP visualization of gstp1 expression in livers from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX for 3 weeks. (C) Masson’s trichome stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. Scale bars represent 50 µm. (D) TUNEL- and DAPI-stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 4 weeks treatment with DMSO or DOX. DNase I treatment was employed as a positive control. Scale bars represent 50 µm.

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: RNA Sequencing, Expressing, Staining, Isolation, TUNEL Assay, Positive Control

    (A) Schematic of DMSO/DOX pulse-chase experiments in adult TO:NRF2 T80K zebrafish. (B) Representative H&E-staining in liver sections from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (C) Representative immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (D) Multidimensional scaling (MDS) plot of bulk RNA-Seq data obtained from livers isolated from adult TO:NRF2 T80K zebrafish after 14 days treatment with either DMSO or DOX, followed by 28-days withdrawal of DMSO or DOX, n=3. (E) Heatmap of hepatocyte and cholangiocyte gene expression in livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX, as determined by bulk RNA-Seq analysis, n=3. (F) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO for 14 days (left), followed by withdrawal of DOX versus DMSO for 28 days (right), n=3. Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green. (G) Volcano plot of DEGs identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment (left), followed by withdrawal of DOX for 4 days (right). Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green.

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Schematic of DMSO/DOX pulse-chase experiments in adult TO:NRF2 T80K zebrafish. (B) Representative H&E-staining in liver sections from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (C) Representative immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (D) Multidimensional scaling (MDS) plot of bulk RNA-Seq data obtained from livers isolated from adult TO:NRF2 T80K zebrafish after 14 days treatment with either DMSO or DOX, followed by 28-days withdrawal of DMSO or DOX, n=3. (E) Heatmap of hepatocyte and cholangiocyte gene expression in livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with either DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX, as determined by bulk RNA-Seq analysis, n=3. (F) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO for 14 days (left), followed by withdrawal of DOX versus DMSO for 28 days (right), n=3. Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green. (G) Volcano plot of DEGs identified by RNA-Seq analysis of TO:NRF2 T80K versus Control HepG2 cells after 4 days of DOX treatment (left), followed by withdrawal of DOX for 4 days (right). Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green.

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: Pulse Chase, Staining, RNA Sequencing, Isolation, Gene Expression, Control

    (A) Periodic Acid-Schiff (PAS)-stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (B) Heatmap of NRF2 target gene expression in livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX as determined by bulk RNA-Seq analysis, n=3. (C) MDS Plot of RNA-Seq data from Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment, followed by withdrawal of DOX for 4 days.

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Periodic Acid-Schiff (PAS)-stained histological sections from livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX. Scale bars represent 50 µm. (B) Heatmap of NRF2 target gene expression in livers isolated from adult TO:NRF2 T80K zebrafish after 7- or 14-days treatment with DMSO or DOX, followed by 7- or 28-days withdrawal of DMSO or DOX as determined by bulk RNA-Seq analysis, n=3. (C) MDS Plot of RNA-Seq data from Control and TO:NRF2 T80K HepG2 cells after 4 days of DOX treatment, followed by withdrawal of DOX for 4 days.

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: Staining, Isolation, Targeted Gene Expression, RNA Sequencing, Control

    (A) Schematic of the epigenetic-focused small molecule inhibitor screen. (B) Heatmap of NRF2 target gene expression in livers isolated from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX in the absence or presence of 250 nM FHD-286 for 14 days as determined by bulk RNA-Seq analysis, n=3. (C) Volcano plot of DEGs identified by bulk RNA-Seq of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO both in the presence of 250 nM FHD-286 for 14 days as determined by bulk RNA-Seq analysis, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue.

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Schematic of the epigenetic-focused small molecule inhibitor screen. (B) Heatmap of NRF2 target gene expression in livers isolated from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX in the absence or presence of 250 nM FHD-286 for 14 days as determined by bulk RNA-Seq analysis, n=3. (C) Volcano plot of DEGs identified by bulk RNA-Seq of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX versus DMSO both in the presence of 250 nM FHD-286 for 14 days as determined by bulk RNA-Seq analysis, n=3. Significant DEGs are highlighted in pink. Select canonical NRF2 target genes are highlighted in blue.

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: Targeted Gene Expression, Isolation, RNA Sequencing

    (A) Quantification of cholangiocyte area (mScarlet3), as a ratio of liver area (CFP) area, from an in vivo chemical suppressor screen using an epigenetic-focused library of small molecule inhibitors. The blue dashed line indicates the mean of the DMSO-treated group, whereas the red dashed line indicates the mean of the DOX-treated group. (B) Representative confocal images of CFP (hepatocyte, cyan), mScarlet3 (cholangiocyte, red), and a 3D-rendered mask of the cholangiocyte network from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae with DMSO or DOX in the absence or presence of 100 nM FHD-286 from 5 to 10 dpf. White scale bars represent 50 µm. (C) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=11. (D) Representative H&E and immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX in the absence or presence of 250 nM FHD-286 for 14 days. (E) Quantification of Anxa4 (cholangiocyte) area normalized to CFP (liver) area, n=6. (F) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX (left) or DMSO (right) in the presence versus absence of 250 nM FHD-286 for 14 days. Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green. (G) Gene essentiality scores for SMARCA4 (left) and SMARCA2 (right) in KEAP1 (WT) and KEAP1 (Mutant) samples from TCGA DEPMAP .

    Journal: bioRxiv

    Article Title: NRF2 co-opts the SWI/SNF complex to drive liver cell plasticity

    doi: 10.64898/2026.02.09.704724

    Figure Lengend Snippet: (A) Quantification of cholangiocyte area (mScarlet3), as a ratio of liver area (CFP) area, from an in vivo chemical suppressor screen using an epigenetic-focused library of small molecule inhibitors. The blue dashed line indicates the mean of the DMSO-treated group, whereas the red dashed line indicates the mean of the DOX-treated group. (B) Representative confocal images of CFP (hepatocyte, cyan), mScarlet3 (cholangiocyte, red), and a 3D-rendered mask of the cholangiocyte network from TO:NRF2 T80K ; anxa4 :mScarlet3 zebrafish larvae with DMSO or DOX in the absence or presence of 100 nM FHD-286 from 5 to 10 dpf. White scale bars represent 50 µm. (C) Quantification of mScarlet3 (cholangiocyte) area normalized to CFP (liver) area, n=11. (D) Representative H&E and immunofluorescent staining of CFP (hepatocyte, magenta) and Anxa4 (cholangiocyte, yellow) in liver sections from adult TO:NRF2 T80K zebrafish treated with DMSO or DOX in the absence or presence of 250 nM FHD-286 for 14 days. (E) Quantification of Anxa4 (cholangiocyte) area normalized to CFP (liver) area, n=6. (F) Volcano plot of DEGs identified by bulk RNA-Seq analysis of livers isolated from adult TO:NRF2 T80K zebrafish treated with DOX (left) or DMSO (right) in the presence versus absence of 250 nM FHD-286 for 14 days. Significant DEGs are highlighted in pink. Hepatocyte markers are highlighted in blue. Cholangiocyte markers are highlighted in green. (G) Gene essentiality scores for SMARCA4 (left) and SMARCA2 (right) in KEAP1 (WT) and KEAP1 (Mutant) samples from TCGA DEPMAP .

    Article Snippet: Membranes were incubated with anti-HNF4α (C11F12) Rabbit mAb (Cell Signaling Technology, 3113), anti-β-Actin (8H10D10) Mouse mAb (Cell Signaling Technology, 3700), anti-NRF2 (E5F1A) Rabbit mAb (Cell Signaling Technology, 20733), or anti-Histone H3 Rabbit pAb (Abcam, ab1791) primary antibodies prior to incubation with IRDye secondary antibodies (LI-COR) and imaged using the Odyssey DLx imaging system (LI-COR).

    Techniques: In Vivo, Staining, RNA Sequencing, Isolation, Mutagenesis

    Fig. 2. Recombinant VSIG4 activates the NRF2 signaling pathway to inhibit oxidative stress and inflammatory responses in

    Journal: Frontiers in Bioscience-Landmark

    Article Title: VSIG4 Alleviates Intracranial Hemorrhage Injury by Regulating Oxidative Stress and Neuroinflammation in Macrophages via the NRF2/HO-1 Signaling Pathway

    doi: 10.31083/fbl37810

    Figure Lengend Snippet: Fig. 2. Recombinant VSIG4 activates the NRF2 signaling pathway to inhibit oxidative stress and inflammatory responses in

    Article Snippet: Subsequently, the membrane was incubated overnight at 4 °C with primary antibodies, namely rabbit anti-mouse NRF2 (1:2000; CST, 12721, Danvers, MA, USA), heme oxygenase-1 (HO-1) (1:2000; CST, 70081, USA), B-cell lymphoma 2 (Bcl-2) (1:2000; CST, 3498, USA), Bax (1:2000; CST, 2772, USA), VSIG4 (1:2000; Abcam, ab252933, Cambridge, UK), and GAPDH (1:2000; CST, 2118, USA).

    Techniques: Recombinant

    Fig. 5. The NRF2 inhibitor Brusatol inhibits the protective effect of VSIG4 in vitro. (A–C) Western blotting analysis of NRF2 and HO-1 in RAW264.7 cells exposed to Brusatol, n = 3. (D–F) Levels of GSH, SOD and MDA levels in Brusatol-exposed RAW264.7

    Journal: Frontiers in Bioscience-Landmark

    Article Title: VSIG4 Alleviates Intracranial Hemorrhage Injury by Regulating Oxidative Stress and Neuroinflammation in Macrophages via the NRF2/HO-1 Signaling Pathway

    doi: 10.31083/fbl37810

    Figure Lengend Snippet: Fig. 5. The NRF2 inhibitor Brusatol inhibits the protective effect of VSIG4 in vitro. (A–C) Western blotting analysis of NRF2 and HO-1 in RAW264.7 cells exposed to Brusatol, n = 3. (D–F) Levels of GSH, SOD and MDA levels in Brusatol-exposed RAW264.7

    Article Snippet: Subsequently, the membrane was incubated overnight at 4 °C with primary antibodies, namely rabbit anti-mouse NRF2 (1:2000; CST, 12721, Danvers, MA, USA), heme oxygenase-1 (HO-1) (1:2000; CST, 70081, USA), B-cell lymphoma 2 (Bcl-2) (1:2000; CST, 3498, USA), Bax (1:2000; CST, 2772, USA), VSIG4 (1:2000; Abcam, ab252933, Cambridge, UK), and GAPDH (1:2000; CST, 2118, USA).

    Techniques: In Vitro, Western Blot

    Fig. 6. The NRF2 inhibitor Brusatol inhibits the protective effect of VSIG4 in vivo. (A) Neurological scores, n = 5. (B) Brain water content, n = 5. (C–G) Western blot analysis was conducted to measure the protein levels of NRF2, HO-1, Bcl-2, and Bax in brain tissues

    Journal: Frontiers in Bioscience-Landmark

    Article Title: VSIG4 Alleviates Intracranial Hemorrhage Injury by Regulating Oxidative Stress and Neuroinflammation in Macrophages via the NRF2/HO-1 Signaling Pathway

    doi: 10.31083/fbl37810

    Figure Lengend Snippet: Fig. 6. The NRF2 inhibitor Brusatol inhibits the protective effect of VSIG4 in vivo. (A) Neurological scores, n = 5. (B) Brain water content, n = 5. (C–G) Western blot analysis was conducted to measure the protein levels of NRF2, HO-1, Bcl-2, and Bax in brain tissues

    Article Snippet: Subsequently, the membrane was incubated overnight at 4 °C with primary antibodies, namely rabbit anti-mouse NRF2 (1:2000; CST, 12721, Danvers, MA, USA), heme oxygenase-1 (HO-1) (1:2000; CST, 70081, USA), B-cell lymphoma 2 (Bcl-2) (1:2000; CST, 3498, USA), Bax (1:2000; CST, 2772, USA), VSIG4 (1:2000; Abcam, ab252933, Cambridge, UK), and GAPDH (1:2000; CST, 2118, USA).

    Techniques: In Vivo, Western Blot

    Journal: Cell reports

    Article Title: Nanoparticle-based itaconate treatment recapitulates low-cholesterol/low-fat diet-induced atherosclerotic plaque resolution

    doi: 10.1016/j.celrep.2024.114911

    Figure Lengend Snippet:

    Article Snippet: anti-mouse NRF2 (D1Z9C) XP Rabbit mAb , Cell Signaling Technology , Cat#: 12721; RRID:AB_2715528.

    Techniques: Purification, Plasmid Preparation, Produced, Recombinant, Concentration Assay, Saline, Labeling, Membrane, Enzyme-linked Immunosorbent Assay, Quantitation Assay, Phospholipid Assay, BIA-KA, RNAscope, HD Assay, Polymer, Sequencing, Gene Expression, Software, Microscopy

    Antibody list.

    Journal: Nutrients

    Article Title: Ganoderma lucidum Polysaccharides Ameliorate Acetaminophen-Induced Acute Liver Injury by Inhibiting Oxidative Stress and Apoptosis along the Nrf2 Pathway

    doi: 10.3390/nu16121859

    Figure Lengend Snippet: Antibody list.

    Article Snippet: The antibodies including rabbit anti-mouse Nrf2, HO-1, GCLC, NQO1, and β-actin were purchased from ABclonal Technology Co., Ltd. (Wuhan, China), and goat anti-rabbit IgG HRP was purchased from Beyotime Biotech, Inc. (Shanghai, China).

    Techniques:

    Primer sequence of qRT-PCR.

    Journal: Nutrients

    Article Title: Ganoderma lucidum Polysaccharides Ameliorate Acetaminophen-Induced Acute Liver Injury by Inhibiting Oxidative Stress and Apoptosis along the Nrf2 Pathway

    doi: 10.3390/nu16121859

    Figure Lengend Snippet: Primer sequence of qRT-PCR.

    Article Snippet: The antibodies including rabbit anti-mouse Nrf2, HO-1, GCLC, NQO1, and β-actin were purchased from ABclonal Technology Co., Ltd. (Wuhan, China), and goat anti-rabbit IgG HRP was purchased from Beyotime Biotech, Inc. (Shanghai, China).

    Techniques: Sequencing

    Effect of GLP treatment on the expression of Nrf2 pathway-related genes and proteins: ( A ) Nrf2, HO-1, GCLC, and NQO1 mRNA expression levels in liver tissue; ( B ) quantitative analysis of protein expression ( n = 6); ( C ) protein imprinting analysis; compared with the normal group, ** p < 0.01; compared with the model, # p < 0.05, ## p < 0.01. Normal control: blank control group, model: model group, positive control: positive group, GLP-L: Ganoderma lucidum polysaccharide low-dose group, GLP-M: Ganoderma lucidum polysaccharide medium-dose group, GLP-H: Ganoderma lucidum polysaccharide high-dose group.

    Journal: Nutrients

    Article Title: Ganoderma lucidum Polysaccharides Ameliorate Acetaminophen-Induced Acute Liver Injury by Inhibiting Oxidative Stress and Apoptosis along the Nrf2 Pathway

    doi: 10.3390/nu16121859

    Figure Lengend Snippet: Effect of GLP treatment on the expression of Nrf2 pathway-related genes and proteins: ( A ) Nrf2, HO-1, GCLC, and NQO1 mRNA expression levels in liver tissue; ( B ) quantitative analysis of protein expression ( n = 6); ( C ) protein imprinting analysis; compared with the normal group, ** p < 0.01; compared with the model, # p < 0.05, ## p < 0.01. Normal control: blank control group, model: model group, positive control: positive group, GLP-L: Ganoderma lucidum polysaccharide low-dose group, GLP-M: Ganoderma lucidum polysaccharide medium-dose group, GLP-H: Ganoderma lucidum polysaccharide high-dose group.

    Article Snippet: The antibodies including rabbit anti-mouse Nrf2, HO-1, GCLC, NQO1, and β-actin were purchased from ABclonal Technology Co., Ltd. (Wuhan, China), and goat anti-rabbit IgG HRP was purchased from Beyotime Biotech, Inc. (Shanghai, China).

    Techniques: Expressing, Control, Positive Control